There isn't a single Ka value for a diprotic acid as the Ka value is an expression for the dissociation of one proton into solution.
Think about it like this: [tex]
K_{a1} = \frac{[H_3O^+][HA^-]}{[H_2A]}
[/tex]
and [tex]
K_{a2} = \frac{[H_3O^+][A^-]}{[HA]}
[/tex]
Now, usually [tex]K_{a1} >> K_{a2}[/tex], meaning that the first proton of a diprotic acid usually dissociates more easily than the second proton, so you could say that - in general - that K_a1 is the best metric for the strength of your acid. For example, H2SO4 has a pKa1 = -2.89 and its mono-deprotonated version (bisulfate ion, HSO4-) has pKa2 = 1.99.