I was wondering about that just today, actually. I was doing a distillation of xylene under vacuum and thought I should grease up the joints real good. Well, low and behold, when the few drops of water started to come over before the xylene, they were cloudy and I instantly knew that grease had got into the mix. I don't want this to happen whenever I do vacuum (especially when I need the distillate to be clean of contaminants), so I'm taking it that the best suggestion for not allowing grease into your set up is just rubbing a light coat around the top and then swiveling the ground glass joints until you see them solidly coated?
Now I used to just grease the top half off the joints when doing distillations under vaccuum or N
2. However, I'm working in a lab with an inorganic chemist who does a lot of work under inert atmospheres and with very dry solvents etc. and he says it is better to grease the whole joint.
The reason for this is that, when doing a distialltion, greasing the entire joint provides a full seal. If only a portion of the joint is greased, the solvent can get into the joint and start mixing with the grease more readily, pulling it into the system.
That said, I reiterate that grease isn't usually really that much of a problem in organic chemistry, as the reaction mixtures can be stripped free of any grease that did get in there when the time comes.