But what about cases like H2SO4, H3PO4, NO2, SO2, SO3, CO2, etc..
There are a lot more examples where the 'central atom' is actually the less electronegative one. So, I think we just call an atom 'central atom' because it's easy to analyze the structure of a molecule using it like a reference point/origin.
Please forgive me if what I'm saying is wrong/makes no sense... This is just my personal opinion