I would have expected claims different from that.
I expect the lowest valence orbital to be the one without a nodal plane - if I understand the terms properly. That is, this lowest is the one that has a constant sign over the whole molecule. The three others have both signs, hence pass by zero through some curved surface, which is a plane for an isolated atom, and approximately one in methane.
An isolated carbon has three 2p orbitals, of which two are occupied, in addition to two electrons filling the 2s. Well, few people have already seen an isolated carbon atom in its ground state, as this needs difficult conditions.
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I wondered as well if the spectrum peak of higher energy were from 1s, but the clear answer is NO. Because 1 proton puts the 1s energy at -13.6eV, so 6 protons would put it (for a single electron, sure) around -500eV, not near -20eV as the spectrum shows. Clearly from valence.
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The sp3 hybridization has a serious drawback, in addition to this spectrum: the weighted sum of the 2s and 2p orbitals called sp3 is not a stationary solution. It oscillates over time and must radiate light - it does, in fact: lithium has a 2p to 2s line. Sp3 is not an eigenfunction of the energy operator. It is not a stable orbital. It won't appear on a spectrum.
In contrast, the four molecular orbital sketched in the Pdf are independent from time.
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It is important to understand that these four molecular orbitals do not correspond to one C-H bond each. It is most obvious at the lowest orbital (left drawing) which is identical in all 4 directions. The remaining three are identical in all 4 directions as well: they only change their sign at one of three "planes" of symmetry.
Did you notice? The axis of each carbon's 2p differs from the directions of the hydrogens. If you like crystals, the 2p are in 100 directions and the hydrogens in 111.
Welcome to the world of quantum mechanics... No, I'm not at home there neither. And it's disturbing for everyone.
Also useful to understand: you can't distinguish between electrons. So you don't have to (and can't) tell to which C-H bond one electron pertains. You can only tell "this orbital is occupied", which is the assertion that has experimental consequences.