Sometimes, chemists do isolate and visualize a single atom or ion, and I assume molecule, although I haven't heard of that one. Such things make great photos, and you'll hear about them on the news, or read about them in Popular Science, or Scientific American, or Discovery or other such magazine sources. These sorts of things are cool, but I don't pay a lot of attention to them, because like you've said, there isn't a lot of practical use. So I can only give you the above hints to where to look, not specifics. Thing is, those visualizations of trapped single atoms are happening deep inside a large expensive machine, using high powered laser and magnetic fields and things like that. What you're asking for, a single molecule, in a pressurized gas or a vacuum, in a vial, that you can hold -- I don't think that's been done.