I am having a hard time understanding what your question is. If the volume of solution in the dialysis increases (and it usually does), then the protein will become more dilute. If this is a problem, it may be possible to reconcentrate the protein with ultrafiltration or related techniques. Neither phosphate nor Tris absorbs strongly at 280 nm in my experience. Therefore, I don't see why they would interfere with measuring the concentration of protein, although referencing correctly is important.