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Topic: 3D representations  (Read 2065 times)

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Offline Big-Daddy

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3D representations
« on: April 08, 2013, 07:01:45 PM »
Are there any molecules for which it is not possible to indicate the 3D shape of the molecule and its structure using the wedge/dashed bonds notation for the stereochemistry? For example (sorry but I have no idea of the IUPAC name) the product of the Diels-Alder reaction between cyclohexadiene and acrolein (see "asymmetric DA reactions" here: http://en.wikipedia.org/wiki/Diels%E2%80%93Alder_reaction) - this structure is quite blatantly three dimensional. Is that because it isn't possible to draw it in 2 dimensions using the normal stereochemistry notation?

Offline discodermolide

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Re: 3D representations
« Reply #1 on: April 08, 2013, 09:20:35 PM »
In 2 dimensions it looks like this note the smiles engine put the word chiral in there.

O=C[C@H]1CC2C=CC1CC2

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Offline Big-Daddy

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Re: 3D representations
« Reply #2 on: April 08, 2013, 09:31:00 PM »
Oh so it can be drawn in 2D ... do you know of any molecules that cannot? i.e. that cannot be drawn in 2D in theory, even though sometimes it might be impractical.

BTW there are 3 chiral centres which makes the stereochemistry important, does this mean that your currently dashed bond to C=O might become wedged in a stereisomer?

Offline discodermolide

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Re: 3D representations
« Reply #3 on: April 08, 2013, 09:35:13 PM »
Well yes it would be a wedge in a stereoisomer.
I drew the molecule as it was described on the Wiki page with the aldehyde "down"
Here the aldehyde is "up"

O=C[C@@H]1CC2C=CC1CC2

To answer your other question, I don't know!
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Offline Big-Daddy

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Re: 3D representations
« Reply #4 on: April 08, 2013, 09:47:49 PM »
Well yes it would be a wedge in a stereoisomer.
I drew the molecule as it was described on the Wiki page with the aldehyde "down"
Here the aldehyde is "up"

O=C[C@@H]1CC2C=CC1CC2

To answer your other question, I don't know!

OK, thanks for your *delete me* :)

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