Why not roughly estimate it?
Consider hydrogen. There is one electron and in the ground state the electron is in a 1s orbital. The wavefunction extends out to infinity so in principle the density is zero because the electron is spread over an infinite volume, but let's put an upper limit on it. Arbitrarily I will say that the electron is confined to a sphere of radius 3.147896 times the Bohr radius, which is where an electron in a 1s hydrogen orbital will be found 95% of the time. I calculated this by integrating the radial probability distribution and setting it equal to 0.95, solving for distance from the nucleus in factors of Bohr radius.
Anyway, the volume of space enclosed by 3.147896 Bohr radii is 1.934 X 10-29 cubic meters. The mass of an electron is 9.109382 x 10-31 kg. Therefore the density is estimated to be 0.0471 kg/m3. (You can neglect volume of the nucleus, which is incredibly small comparably).
This calculation is quite crude but it should at least give you a feel for scale. For comparison, the density of water in the same units is about 997 kg/m3, over 21,000 times larger. In fairness, hydrogen is a rather light atom. What about something like lead? Well, a lead atom has 82 electrons. So is the density of electrons in lead 82 times that of hydrogen? Not really, because those electrons are forced into more diffuse orbitals which are spread out over larger volumes. For example, an electron in a hydrogen 3d orbital has an estimated mass density (taking a crude determination of confining to a shell ranging from 4 to 18 Bohr radii, and still working with hydrogenic wavefunctions) of about 0.0002547 kg/m3. Given that the real density of lead in solid form is 11340 kg/m3, this should show you that almost all of the density of solid matter comes from the nuclei.