Lets say you have traces of starting material left in your product which is impractical to remove. Can you just overlay the spectrum of the pure starting material with that of your product in order to make the starting material invisible? The only problem I see is that the starting material might have some identical chemical shifts to the product, so you'd end up with a partial spectrum, but having a partial spectrum would still be useful because it'll consist of peaks corresponding to new functional groups, and old functional groups which have had their electronic environment altered significantly. Another problem is that some of the new or shifted peaks might overlap with the old peaks from the starting material, so some new functional groups would be made invisible. Still, a partial spectrum could reveal useful information.