Also you say to remove the 'lower layer' of CHCl3, so is that 500 uL? Should i remove this layer immediately after shaking, before the glycerin separates to the top, or should i wait a few seconds for the glycerin to coagulate at the top?
SAFETY
Working with volatile solvents should be done in fume hood. Also, I have read that dichloromethane (CH2Cl2) is less toxic than chloroform, while having very similar extractive properties.
Each layer will be about 500 uL; you want the lower layer (CHCl3). After vigorous shaking to thoroughly mix the two layers, allow to stand for 1-2 mins for layers to separate.
Is using more glycerin extract going to skew the measurement of the results (we have transparent sheets with various spot sizes on them to measure the %), or will it just make the spots darker and easier to measure?
For detectability, more is always better as long as the loading does not degrade the chromatographic separation or saturate the detector.
Suggest that initially you run three spots, with loadings of 1, 5 and 10 uL, respectively to see (i) if the chromatography is affected by heavier loadings, and (ii) how the size/color of spot varies.
Motoball