How much free acid do you expect is in paper. I understand a certain level leads to deterioration over decades, but I don't know what amount is too much. If you got all of it out of 2 kilos of paper, and its still barely detectable, maybe titrations aren't ever going to work. Like Hunter2: said, a proper titration will require more than a few drops of titrant.
If you're having trouble with the methyl orange endpoint, which isn't the easiest one to see, I'll grant you, you can use phenolpthalein, to a clear endpoint that doesn't return for 15 sec. But still, how much free acid do you expect in a kilo of paper, and if you prepare a solution of HCl to that level, can you execute the titration or not? If you can't, you may have to analyze by a different method.