Instead of pumping through the column, turn on the purge valve.
Set it at a flow rate, say 1mL/min, start the flow for a few second and make sure the pumps are at full speed. Get a timer and set it for 5 minutes. Start collecting the effluent into a good graduated cylinder, start the timer when you start collecting. In 5 minutes you should have 5 mL. Mark the level with a sharpe. Repeat the procedure. Does it come back up to the sharpe level the second time (within error)? Is it 5 mL within error?
If you have a dual pump system, do it with each pump individually.
And if you do a lot of gradients and work over different ranges, I would check it at different flow rates. IE. 0.5mL/min, 1mL/min, 2mL/min. Depending on your usage.
Or HPLC is going nearly 24/7, so I have to do this very often. It is the easiest way to spot trouble, and it sucks when they pumps go bad. We have to replace a part designed to ware down over time every 3-5 months, which is why we check so often.