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Topic: Existence of Major and minor groove. Please Help.  (Read 4126 times)

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Offline o0CY0o

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Existence of Major and minor groove. Please Help.
« on: September 30, 2009, 03:00:23 PM »
Dear all,

I am here to ask about what is the relationship between the "2 strains in DNA not directly opposite to each other " to that of the different length of the major and minor groove.

Please help.

Best regards,
Jeromy

Offline Wreath

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Re: Existence of Major and minor groove. Please Help.
« Reply #1 on: October 01, 2009, 04:10:31 AM »
I'm not really sure if I got the question, but I'll try.
You can recognize major/minor groove by numbering the atoms in purines/pyrimidines. Minor groove is the one which is on the purine/pyrimidine side which have small numbers, major groove is on the large numbers side. It's the only way you can recognize them for sure, I believe.
Major groove has the complete chemical information about the bases, it can be recognized by following the structures like methyl groups, H-bond donors/acceptors. In minor groove, there can not be recognized the concrete base pair just by following this "chemical signs".
If you call the groove major/minor does not depend on size of the groove.

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