If you measured the pH, then the relative uncertainty is your uncertainty divided by your best estimate. Take your relative uncertainty times 100 to get the percentage.
As for the error propagation across, say y=log(x), the relative uncertainty in y is proportional to the relative uncertainty in x by 1/ln(10). So, to get the error in y one takes (relative error in x) times (1/ln(10)). I've been told you shouldn't use percent relative uncertainty with these calculations (I don't know why).
For your last question:pkA, obviously, depends on the Ka. So, what affects Ka will change pkA. Changes in concentration, temperature and pressure will affect the equilibrium position (which your principle will tell you about), but Keq remains the same because of Le Chatelier's principle. If you increase the temperature, heat will be consumed by the system, then shift the equilibrium in the endothermic direction (changes K). Likewise, if you add reactant, some of the added reactant is used and the production concentration increases ultimately leaving no change on K. The actual dependence of K on temperature is thermodynamic in nature, and I'm not sure I can explain it in a better way.