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Topic: Identification of protein structure  (Read 4255 times)

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Offline HB

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Identification of protein structure
« on: October 06, 2010, 02:22:30 PM »
I have an extract from plant origin that contain a protein component and polysaccharide component and I need to know the chemical structure of both products. what are the steps need to be done?

Offline MOTOBALL

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Re: Identification of protein structure
« Reply #1 on: December 03, 2010, 10:34:58 PM »
Does the extract contain a protein component mixed with a polysaccharide component, or is it a covalently linked Prot-Carb, i.e. a glycoprotein ??

In any case,

1) the extract needs to be purified to homogeneity (not a trivial task),

2) the protein requires (at a minimum) MW detmn; aminoacid analysis (AAA); N-terminal sequencing (Edman degradation); cyanogen bromide cleavage at Met residues to generate polypeptides; peptide mapping of these fragments and also of trypsin/chymotrypsin digests; disulfide bond location. 

This is a labor and instrumentation-intensive process (i.e. $$$$$).

3) the polysaccharide needs MW detmn; quantitative monosaccharide analysis; sequence analysis; linkage analysis; alpha/beta anomeric detmn.; point(s) of attachment to protein.

This is another $$$$ process.

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