1) There are several ways to get the potential energy out, but I haven't done a calculation in a while, and without knowing what operating system/software you have available I can't really give you any helpful advice. If there's a professor or graduate student around where you are that does these calculations, they should be able to take three minutes and help you out.
2) Obtaining the global minimum can be a challenging task that takes months of work, and it depends on the system that you're optimizing. (What is the system that you're optimizing?)
3) You should always check negative frequencies when you do vibrational analysis. A negative frequency is an obvious indication of an impossible solution to the vibrational modes. This usually comes about as a result of a structure that has not been totally optimized. However, if you change your basis set in-between the geometry optimization and the vibrational analysis (which sometimes is done on purpose) you will get imaginary frequencies. If you've used "opt freq" as keywords, as you've probably done, you should not get negative frequencies.