First, Recrystallize if you can. Im guessing that the acid is making the spots very streaky. Try to find a solvent mixture where the product is ~33% Rf, then carefully run a column with a gradient up to that. Sand can be used to reduce the perturbation of the silica layer by the pipette. Recrystallize.
If that fails, another way is ion exchange chromatography. This will work: run a reverse phase column/HPLC, make it a anion with Na2HPO4. 1:19 0.005M Na2HPO4:MeOH; this can be very expensive depending on the scale of your reaction, however.