Exactly. Sometimes one only knows the "connectivity" of a natural product, but the stereochemistry may not be established. By making all the possibilities, and then characterize all of them, one can single out the one with the correct relative/absolute stereochemistry by comparing the data..
Another useful application of stereodivergence would be in the case of biologically active compounds. Sometimes it might be of interest to see how changes in the stereochemistry of the natural product can affect its biological activity.