i have tried to seprate the fatty acid methyl esters using GCMS technique with a polar stantionary phase column" ODB" ,,, and it provide good results... so maybe i think u have to try this,,, there u will find many procedures how to do this... about the external standerd whats the nomber of C atoms u used?
and as u know FAME is not high polar compounds .. so it can be easly separated in the Si phenyl alkyl stationary phase..
am wondering if u have a suitable procedure how to separte these phospholipids using HPLC with UV detection.. because i found many articles but non provided me good resluts,,,
thnx