Jena,
Spills and long-term contamination are handled differently.
For long-term contamination, bioremediation has been getting some pubs lately (last 5 years). In bioremediation, there are different ways to try to either bioaccumulate mercury or convert it to less dangerous form. In the later, several "mercury resistent" bacteria have been researched as possible candidates to do the conversion. Some common bacteria are: Klebsiella sp., Pseudomonas sp., and Clostridium sp.
If you are not finding any info, try some of the above terms and you should probably find some sites or some publications. In those sources there should be some reactions or biomechanisms by which the conversions or accumulation take place.
Good luck.