December 22, 2024, 03:20:57 AM
Forum Rules: Read This Before Posting


« previous next »
Pages: [1]   Go Down

Topic: Molecular modeling program  (Read 6943 times)

0 Members and 1 Guest are viewing this topic.

Offline wesida

  • Regular Member
  • ***
  • Posts: 9
  • Mole Snacks: +0/-0
Molecular modeling program
« on: October 16, 2006, 01:34:54 AM »
Hello guys, i was wondring if anyone knows a 3d moelcular modeling software(molecular set subsitute) that i can download?
Thanks
MHB
Logged

Offline mike

  • Retired Staff
  • Sr. Member
  • *
  • Posts: 1245
  • Mole Snacks: +121/-35
  • Gender: Male
Re: Molecular modeling program
« Reply #1 on: October 16, 2006, 02:19:18 AM »
jmol is good. What do you want to use it for?
Logged
There is no science without fancy, and no art without facts.

Offline wesida

  • Regular Member
  • ***
  • Posts: 9
  • Mole Snacks: +0/-0
Re: Molecular modeling program
« Reply #2 on: October 17, 2006, 08:01:35 AM »
hello mike, i want to use it to practice rotation molecules just to get an idea of how it will look and to be able to imagine it in my head for my exam. for example:achiral/chiral molecules, enantomers.
Logged

Offline Albert

  • Lonely Wanderer
  • Retired Staff
  • Sr. Member
  • *
  • Posts: 1050
  • Mole Snacks: +112/-22
  • Gender: Male
  • Half Decent Pharmaceutical Chemist
Re: Molecular modeling program
« Reply #3 on: October 17, 2006, 10:56:38 AM »
What about Chem3D ultra?
Logged

Offline enahs

  • 16-92-15-68 32-7-53-92-16
  • Retired Staff
  • Sr. Member
  • *
  • Posts: 2179
  • Mole Snacks: +206/-44
  • Gender: Male
Re: Molecular modeling program
« Reply #4 on: October 17, 2006, 11:05:27 AM »
ChemSketch
http://www.acdlabs.com/download/
Has a free version and you can download a free 3D viewer add on to view models in 3D.
Logged

Offline mike

  • Retired Staff
  • Sr. Member
  • *
  • Posts: 1245
  • Mole Snacks: +121/-35
  • Gender: Male
Re: Molecular modeling program
« Reply #5 on: October 17, 2006, 07:44:06 PM »
I would just download jmol and then search the internet for the molecules you want to look at (you may not even want to download jmol and just look at the molecules on peoples websites). You can search for .pdb files of molecules.
Logged
There is no science without fancy, and no art without facts.

Offline wesida

  • Regular Member
  • ***
  • Posts: 9
  • Mole Snacks: +0/-0
Re: Molecular modeling program
« Reply #6 on: October 18, 2006, 01:31:24 AM »
cool thanks guys for the input  :)
Logged

Offline english

  • Chemist
  • Full Member
  • *
  • Posts: 534
  • Mole Snacks: +31/-10
  • Gender: Male
  • grad student
Re: Molecular modeling program
« Reply #7 on: October 18, 2006, 04:52:07 AM »
Although ChemSketch is good for naming molecules, I prefer ISIS Draw because there are many templates and drawing geometrically sound structures is far easier.

http://www.mdli.com/downloads/
Logged

Offline FeLiXe

  • Theoretical Biochemist
  • Chemist
  • Full Member
  • *
  • Posts: 462
  • Mole Snacks: +34/-7
  • Gender: Male
  • Excited?
    • Chemical Quantum Images
Re: Molecular modeling program
« Reply #8 on: October 18, 2006, 03:45:20 PM »
I like Pymol (http://pymol.sourceforge.net/ for 3D visualisation) but I can't compare it to anything else because I haven't tried anything else. I drew a solid phase peptide picture in pymol which I think is kind of cool: http://en.wikipedia.org/wiki/Image:SPPS.jpg

If you like solid crystals then you can take PowderCell (http://users.omskreg.ru/~kolosov/bam/a_v/v_1/powder/e_cell.htm) I think it's not a common program but it is pretty cool.

if you like orbitals go to www.orbitals.com
Logged
Math and alcohol don't mix, so... please, don't drink and derive!

Offline mir

  • Fascinated organic chemist
  • Chemist
  • Full Member
  • *
  • Posts: 310
  • Mole Snacks: +13/-3
  • Gender: Male
  • Visit my blog: mir.humle.be
    • My humble homepage with norwegian articles
Re: Molecular modeling program
« Reply #9 on: October 20, 2006, 05:53:40 AM »
A good forcefield program: Try Tinker

Arguslab is also a relatively good program (freeware). But that especially accurate.
Logged
No single thing abides, but all things flow.
Fragment to fragment clings, and thus they grow
Until we know and name them.
Then by degrees they change and are no more
The things we know.
- Titus Lucretius Carus

http://www.ife.no
Pages: [1]   Go Up
« previous next »
Sponsored Links