Dear Kate;
You are absolutely right!
“Methylene Blue” is normally only known as a RedOx Indicator (+0.011Volt pH 7.0; +0.582Volt pH 0.0), and I’m not sure that someone knows a real situation where it can be used as a pure Acid/Base Indicator.
(But I’m sure it will show you a certain dependency on the pH because it is a dye, and a basic group is part of its Chromophor. Compare the data above!)
But why the different “Stationary Phases”?:
You have only to remember, that both Indicators are Salts, but one of an Acid and one of a Base!
If you also remember, that Alumina “reacts” basic and Silica on the opposite, you are very close to the solution.
Keep also in mind that for this type of Chromatography it is not very useful to have the Indicators in their Salt Form.
Now it should not be very difficult for you to find the final conclusion.
I hope it is of help to you.
Good Luck!
ARGOS++