Yes, the active form of the enzyme is more ordered.
Another way to think about it is to think about how many "forms" of the enzyme are likely to be active and how many are likely to be inactive? Enzymes work because they have a specific three dimensional structure that aligns certain amino acids to aid in the catalysis of a specific chemical reaction. Enzymes are proteins (i.e. polymers of amino acids) and these polymer can fold into many different configurations. However, very few of these configurations have the proper alignment of amino acids in order for the enzyme to promote catalysis. The simple fact that there are many fewer active microstates of the enzyme than inactive microstates means that the active form of the enzyme is more ordered (recall that Boltzmann defines entropy as S = k ln(Ω), where Ω represents the number of microstates corresponding to a certain state).