Can you say more about the system and the polymer you are using ( mobile phase, columns, detector, temperature used)?
I think you need to stay with the same solvent to dissolve the polymer as used in the mobile phase. Sometimes, when you try to mix the two, you get the polymer precipitating out as soon as it hits the mobile phase at injection. Not a good idea.
If you are using an RI detector, the difference in RI between the two solvents can overload the detector. Your chromatogram will look very bad.
Can you increase the temperature of your mobile phase to increase the solubility of the polymer? Most of the instruments will allow your system to be heated above room temp. You have to be careful with this. THF is good to about 40 C, but going any higher is not a good idea. If you heat your system, it usually adds to the stability of your baseline.
Good luck.