I think a good reference on how FTIR works will point you in the right direction. I would recommend searching your library for a copy of Spectrometric Identification of Organic Compounds by Silverstein, Webster, and Kiemle. It has a really nice chapter on FTIR, breaking it down into the theory behind the technique, how the instruments that use it work, and how to interpret FTIR data. Pay attention especially to how the instruments work, you should be able to find the theory in there to get you started.