Hmmm.... Not sure then. Wet starting material?
I've never actually tried to examine the stability of MsCl to water, but really just assumed it was quite sensitive. I have done a lot of tosylation, mesylation and triflation - and it is only MsCl that ever causes problems for me. I do find that sometimes reactions stall or are very slow, and always assumed this was to do with water in the system. I usually add the MsCl at 0oC and then warm to RT.
I have one last idea (long shot) - is the product you isolate from this reaction, after the long reaction time and large excesses, defnitely the mesylate or it it the alkyl chloride? It occurred to me that perhaps the starting material and the mesylate co-spot on TLC, and the product that takes the time to form is the alkyl chloride by displacement of the mesylate?
If a tosylate would do, I'd just hit it with TsCl - much less fussy reagent.