[krisp]

I have a list of closely related structures that I would like to put into a structure data file. I have a chemdraw file containing these structures, but I'd like to label each structure with a shorthand name (such as LL1, LL2, etc.). Is there a way to do this?

[discodermolide]

I have a list of closely related structures that I would like to put into a structure data file. I have a chemdraw file containing these structures, but I'd like to label each structure with a shorthand name (such as LL1, LL2, etc.). Is there a way to do this?

I'm not sure you can do this from ChemDraw. I think you need ChemBioFinder, the chemical database.
There you can export the database as an sdf file or put it into Excel (the ChemDraw addon for Excel).