We are planning to use a protease to identify the site of chemical modification in a protein that should result in the modification of a cysteine by about 94 mass units. We are thinking both in terms of RP HPLC for peptide mapping and also in terms of possibly doing LC/MS of some sort. We often detect proteins in similar experiments by their absorbance at 215 nm. Trypsin is predicted to give a hexapeptide and LysC is predicted to give a 22-mer. Is a hexapeptide too small to observe by UV detection? Does anyone have any thoughts on the 22-mer? Thanks.