From my experience, a loss of efficiency such as what you are seeing is certainly possible. I had a similar situation where a very well-understood reaction in the lab took ~2 hours and the pilot scale took 4 or 5.
The fact that your yield is unaffected signals to me that it is a scale-up efficiency loss. Depending on your safe operating window, I would try tweaking some of your parameters and see if you can't speed it up some, say increase heat and stirring (if possible). Usually we scaled up using tip speed, but even that didn't always work for us (we were making chemical toners). Most times the lab scale worked as a representation and the process needed to be adjusted to make a viable pilot scale run, and then adjusted again to move up to production rates.
Our pilot scale was ~20 gallon reactors, so figure on ~75 kg. We were up to well over 300 rpm on our mixer, so I would definitely say you could go faster, but that all relates to your specific reaction as well.