Sorry to have ignored this thread for so long, but since it's active again...
Why won't the compound stick to ion-exchange resins? Is the impurity also an anion?
I think the anion may be too weak, but it could be a problem with my procedure. After prepping the column, loading my crude product, and washing with water, all the crude comes out in the first fraction. The impurity is HOBt.
...try TLC with the following eluents:
45:5:1 EtOAc/EtOH/H2O
7:2:1 EtOAc/IPA/H2O
...MeOH MeCN benzene 50:50:10...
With EtOAc/EtOH/H2O, the HOBt moves at Rf 0.2, the product not at all.
MeOH MeCN benzene moves the product well, with some separation from HOBt (Rf 0.4, compared to 0.5). Seems like this system would wash out silica pretty fast, though. Maybe not.
I had pretty good success using RP Sep-Paks in series, eluting with water, then ethanol. But I've just changed to DMAP instead of HOBt in repeating the coupling, so that I can simply wash it out with DCM. I'm hoping that helps, and I'll test a mini-column on the crude product of the first rxn.
Thanks for all the suggestions.