butlerw2,
The biosynthesis of arginine from glutamate is indeed a multistep pathway. In the first step, glutamate is converted to N-acetylglutamate, and the acetyl group is removed at the end of the biosynthesis. The textbook explanation of why the acetylation takes place is to prevent an unwanted side-reaction (cyclization) once the gamma-carboxylate group is reduced to an aldehyde. Offhand, this is the only example I can think of where nature uses protecting group chemistry, but there must be others.