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How do you copyright God's creation?
You don't, you copyright yours, the drawing, the explanation, other artwork, etc.
But there must be hundreds or more of drawings of the atom that are similar. So what's the point? There are times when I see someone or a company getting sued over what is claimed copyright infringement because their drawing is too similar. If I were a judge, I throw the plantiff right out of my courtroom.
I made a copy of the atoms structure from another website.