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Topic: Haemoglobin molecule in Jmol  (Read 7005 times)

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Offline mike

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Haemoglobin molecule in Jmol
« on: May 04, 2006, 02:29:43 AM »
I want to put a PDB file of heaemoglobin in a webpage using Jmol. Now it seems to be easy enough to find haemoglobin files but the problem is I want it to show in ribbon form which I don't seem to be able to do. I don't have much experience with this so maybe someone can help me out.
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Offline Mitch

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Re: Haemoglobin molecule in Jmol
« Reply #1 on: May 04, 2006, 02:43:27 AM »
Have you tried using Rasmol, I know it can display ribbon format.
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Offline mike

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Re: Haemoglobin molecule in Jmol
« Reply #2 on: May 04, 2006, 02:56:01 AM »
Oh, cool yes that definitely displayed the ribbon format thanks :)

Now one more problem, if you or anyone else knows; I want to display the ribbon format except for the heme group which I am hoping to display as ball and stick.
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Offline Yggdrasil

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Re: Haemoglobin molecule in Jmol
« Reply #3 on: May 04, 2006, 04:08:27 AM »
In the command line try typing select ligand then selecting ball and stick in the display menu.
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Offline mike

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Re: Haemoglobin molecule in Jmol
« Reply #4 on: May 04, 2006, 09:06:57 PM »
Thanks guys, got it sorted now :) :)
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Offline Donaldson Tan

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Re: Haemoglobin molecule in Jmol
« Reply #5 on: May 04, 2006, 10:17:37 PM »
Can firefox support PDB?
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Offline mike

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Re: Haemoglobin molecule in Jmol
« Reply #6 on: May 04, 2006, 10:21:32 PM »
I have been having some problem with firefox, but I am a bit of a novice at this type of thing. I have switched to explorer for this Jmol stuff. Someone else may have a better idea.
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Offline Donaldson Tan

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Re: Haemoglobin molecule in Jmol
« Reply #7 on: May 10, 2006, 09:37:56 PM »
btw what chemical plugins are available on the internet?
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"Say you're in a [chemical] plant and there's a snake on the floor. What are you going to do? Call a consultant? Get a meeting together to talk about which color is the snake? Employees should do one thing: walk over there and you step on the friggin� snake." - Jean-Pierre Garnier, CEO of Glaxosmithkline, June 2006
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