@OP, Suppose I have Dowex-1 (a quaternary ammonium resin) in the acetate counterion form, and I bind an amino acid to it. Now I elute the amino acid with 1 N HCl and collect it. The HCl protonates the amino acid, which now has no attraction for the column. The chloride ion binds to the column in its place. This elution will convert the column into the chloride form. Now I have to regenerate the column for the next reaction, meaning putting it back into the acetate form. In this example, the regeneration would be done in two steps to save money: convert the resin into the hydroxide form with a large excess of NaOH, then add a few column volumes of 1 N acetic acid.