I think I see your point.
Imagine having a large container of marbles. You have marbles of different colors - red ones, yellow ones, blue ones and so on. Let's call all the red marbles "marbles of carbon". You can take a single marble and say "it is a marble of carbon", or "it is carbon", you can gather a jar of red marbles and say "it is carbon", "I have a jar of carbon", "I have a jar of carbon marbles". Same with atoms and carbon is an element.